API
- presto.Annotation
addHeader()
annotationConsensus()
collapseAnnotation()
collapseHeader()
convert454Header()
convertGenbankHeader()
convertGenericHeader()
convertIMGTHeader()
convertIlluminaHeader()
convertMIGECHeader()
convertSRAHeader()
copyHeader()
deleteHeader()
expandHeader()
flattenAnnotation()
getAnnotationValues()
getCoordKey()
mergeAnnotation()
mergeHeader()
parseAnnotation()
parseLog()
renameAnnotation()
renameHeader()
- presto.Applications
- presto.Commandline
- presto.IO
- presto.Multiprocessing
- presto.Sequence
AssemblyRecord
AssemblyStats
PrimerAlignment
alignAssembly()
calculateDiversity()
calculateSetError()
checkSeqEqual()
compilePrimers()
consensusUnify()
deleteSeqPositions()
deletionUnify()
extractAlignment()
filterLength()
filterMissing()
filterQuality()
filterRepeats()
findGapPositions()
frequencyConsensus()
getAAScoreDict()
getDNAScoreDict()
indexSeqSets()
joinAssembly()
localAlignment()
maskQuality()
maskSeq()
meanQuality()
overlapConsensus()
qualityConsensus()
referenceAssembly()
reverseComplement()
scoreAA()
scoreAlignment()
scoreDNA()
scoreSeqPair()
sequentialAssembly()
subsetSeqIndex()
subsetSeqSet()
translateAmbigDNA()
trimQuality()
weightSeq()